In the taxon id list mode, users can simply paste a taxon ID list to start. The application will retrieve detailed taxon information from NCBI from NCBI using the taxon ids provided. Further plots can be made from the retrieved data.
Try the sample data for a quick demo
In the taxon id list mode, users can simply upload a table with two columns: one with taxon ids, the second one is expression/abudnace. The application will retrieve detailed taxon information from NCBI using the taxon ids provided. Further plots can be made from the retrieved data. This module will use the abundance value to indicate the relative expression/proportion on the plot. The application will retrieve detailed taxon information from NCBI.
Try the sample data for a quick demo
If you already have a hierarchical structured data with intensity infomration(see the sample data, intensity as last column), you can directly plot from the data provided. This module will use the intensity value to indicate the relative expression/proportion on the plot.
Try the sample data for a quick demo
Data preparation
Try the sample data for quick evaluation
Data preparation
Try the sample data for correct file format, before and uploading
Data preparation
Try the sample data for correct file format, before and uploading
Upload data file (tsv/csv)
Table uploaded
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sunburst

tree map
metamap
sunburst

composition
tree radial
tree branch
About
This apps can be used for quick retreival of NCBI taxon information with detailed and formated output.
A quick visualization of hierarchical data (whether NCBI retrieved or provided) using multiple tree view
Acknowledgement
This shiny apps uses:
taxize: for NCBI querying tool.
d3treeR, treemap, sunburstR, d3Tree, D3partitionR: for all kinds of treeview plot
DT, data.table: to table manipulation and display
colourpicker: for color picking
shinyBS: for progressing status.
Contact
Change log
V0.1: 20171211, app online